Here is what you can do if you want to update your bpel.preference.variable value on 12c Enterprise Manager.
Example, if you have set variable as below in your composite.xml:
<property name="bpel.preference.Email">test@test.com</property>
1. Login to EM [http://hostname:port/em]
2. On Left Navigator, navigate to WebLogic Domain > soa_domain
3. Right-click and select 'System MBean Browser'
4. On next page, left pane scroll at the bottom and expand oracle.soa.config
5. Navigate under that to Server: soa_server > SCAComposite > Your composite[version]
6. Expand and select SCAComposite.SCAComponent > Click on your component
7. On the left pane, under Attributes column click on Properties
8. Under Key expand Element for Email and change the contents of value field.
9. Apply.
The new values should now reflect.
Helpful? Please Comment.
Happy Learning!!